Computational biology
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[edit] Computational biology - Web Resources
BioLinux Bioinformatics-related software for Linux including BioPerl RPMs.
Bioknoppix Run bioinformatics software on Linux from a CD - features EMBOSS, Jemboss, Artemis, ClustalX, CN3D, Rasmol, BioPerl and BioPython,. Bioknoppix is a customized distribution of Knoppix Linux Live CD. With this distrubution you just boot from the CD and you have a fully functional Linux OS distribution with open source applications targeted for the molecular biologist. Beside using some RAM, Bioknoppix doesnt touch the host computer, being ideal for demonstrations, molecular biology students, workshops, etc.
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OpenBio Open Bioinformatics Foundation is a non profit, volunteer run organization focused on supporting open source programming in bioinformatics. The foundation grew out of the volunteer projects Bioperl, BioJava and Biopython and was formally incorporated in order to handle our modest requirements of hardware ownership, domain name management and funding for conferences and workshops.The Foundation does not participate directly in the development or structure of the open source work, but as the members of the foundation are drawn from the member projects, there is clear commonality of direction and purpose.
Biological SOAP
Servers and web services provided by the public sequence data bank. SOAP (Simple Object Access Protocol) server and web services that provide a program-friendly interface to DDBJ.
Molecular Monte Carlo Software Software and Numerical Tools for the Discriminating Monte Carlo Practitioner.
DNALinux Linux distro for bioinformatics. Linux distribution packaged with bioinformatics software. Runs from the CD without installing..
EMBOSS European Molecular Biology Open Software Suite.
Life Sciences Identifier (LSID) Home. Products. Services & industries. Support & downloads. My account. [ Personalized settings. ]. Learn about Business consulting. On Demand Business. Solutions by industry. IT services. Software products. Systems, servers and storage. ...
GMOD
Generic Model Organism Database Construction Set. Joint effort by the model organism system databases WormBase, FlyBase, MGI, SGD, Gramene, Rat Genome Database, EcoCyc, and TAIR to develop reusable components suitable for creating new community databases of biology.
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BioPHP BioPHP project aims to develop modules and, eventually, sample applications for bioinformatics in PHP both for web AND standalone applications. PHP utilities outside of the web is often overlooked.
MyGenBank Package for managing a local copy of GenBank using MySQL. MyGenBank stores only the most important data about each sequence in the actual database. This keeps it pretty small. The sequence itself is not stored in the database. Instead, it is kept in both FASTA and GenBank flat file forms.
Life Sciences Research DTF (OMG) The Life Sciences Research group is a consortium of people representing pharmaceutical companies, academic institutions, software vendors and hardware vendors from all over the world who are working together within the Object Management Group (OMG).
Linux software encyclopedia on Bioinformatics
Next: Bn-Bz. Up: Linux Software Encyclopedia. Previous: An-Az. Contents. Ba-Bm. Last checked or modified: Aug. 10, 1999 [ home. / linux. ] CATEGORIES. NEW. Aa-Am. An-Az. Ba-Bm. Bn-Bz. Ca-Cm. Cn-Cz. Da-Dm. Dn-Dz. Ea-Em. En-Ez. Fa-Fm. Fn-Fz. ...
