Human genetics
From MyBio
Contents |
[edit] Categories which link here
[edit] Related subcategories
- Human genomics
- Human genetic mutations
- Human genetics databases
- Human SNP
- Portals
- Human genetic mapping
- Directories
- Human mitochondrial DNA
- Human EST
- Human genetics organisations
[edit] Human genetics - Quick Links
| Atlas of Genetics | GenAtlas | |
| GeneLoc | Axeldb | |
| Mitomap | UCSC Genome Browser | |
| HGMD | RetNet | |
| GDB | STACK |
[edit] Human genetics - Web Resources
Atlas of Genetics
The Atlas of Genetics and Cytogenetics in Oncology and Haematology contains concise and updated cards on genes involved in cancer, cytogenetics and clinical entities in oncology, and cancer-prone diseases, a portal towards genetics/cancer, and teaching materials in genetics. This database is made for and by researchers and clinicians, who are encouraged to contribute. The Atlas is part of the genome project and it participates in research on cancer epidemiology.
GenAtlas
Atlas of human genes. GENATLAS compiles the information relevant to the mapping efforts of the Human Genome Project. At the time of writing(07/10/2003), this information is collected from more than 48000 articles in the literature, collected in more than 870 reviews. The articles are daily analyzed by annotators to update the GENATLAS database. Only the objects with a known cytogenetic location are retained.
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GeneLoc
Unified db for Human genome mapping, formerly known as The Unified Database for Human Genome Mapping (UDB). GeneLoc presents an integrated map for each human chromosome, based on data integrated by the GeneLoc algorithm. GeneLoc unifies gene collections, eliminates redundancies, and assigns each gene a meaningful location-based identifier, which also serves as its GeneCards ID. GeneLoc currently uses gene sets from NCBI and Ensembl. It compares these collections, deciding which entries should be consolidated and which are discrete. Since the gene annotations use the same assembly and coordinate scheme, GeneLoc effects this gene integration by comparing genomic locations. The resulting GeneLoc gene territory reflects the range of the unified genes, taking into account every exon.
Axeldb
Axeldb is a database storing and integrating gene expression patterns and DNA sequences identified in an ongoing large-scale in situ hybridization study in Xenopus laevis embryos. The data are organised in a format appropriate for comprehensive analysis, and enable to compare images of expression pattern for any given set of genes. Informations on litterature, cDNA clones and their availability, nucleotidic sequences, expression pattern and accompanying pictures are available. Current developments are aimed toward the interconnection with other databases and the integration of more informations. Submission tools are available to allow the users to enter comments and new data. Axeldb is implemented using an acedb database system.
Mitomap
A human mitochondrial genome database of polymorphisms and mutations.
UCSC Genome Browser
sequence and annotation data downloads for these genomes of Human, Mouse, Rat, Fugu, C. elegans, C. briggsae and SARS.
HGMD
Human Gene Mutation Database. HGMD represents an attempt to collate known (published) gene lesions responsible for human inherited disease. This database, whilst originally established for the study of mutational mechanisms in human genes (Cooper and Krawczak 1993), has now acquired a much broader utility in that it embodies an up-to-date and comprehensive reference source to the spectrum of inherited human gene lesions. Thus, HGMD provides information of practical diagnostic importance to (i) researchers and diagnosticians in human molecular genetics, (ii) physicians interested in a particular inherited condition in a given patient or family, and (iii) genetic counsellors.
RetNet
Cloned and/or Mapped Genes Causing Retinal Diseases.
GDB
Genome Data Base. Includes regions of the human genome, including genes, clones, amplimers (PCR markers), breakpoints, cytogenetic markers, fragile sites, ESTs, syndromic regions, contigs and repeats. Also includes maps of the human genome, including cytogenetic maps, linkage maps, radiation hybrid maps, content contig maps, and integrated maps. These maps can be displayed graphically via the Web. Variations within the human genome including mutations and polymorphisms, plus allele frequency data. Note that GDB does not currently store human sequence data or raw mapping data such as pedigrees or genotypes. Such data are available from other sources.
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STACK
Sequence Tag Alignment and Consensus Knowledgebase (database of consensus human ESTs). The STACK project aims to generate a comprehensive representation of the sequence of each of the expressed genes in the human genome by extensive processing of gene fragments to make accurate alignments, highlight diversity and provide a carefully joined set of consensus sequences for each gene. The STACK project is comprised of the STACKdb human gene index, a database of virtual human transcripts, as well as stackPACK, the tools used to create the database.
