MyBio Top 100

From MyBio

This table of popular links for molecular biologists is based on the most popular tools for MyBio, which recorded over 414,000 user referals to these tools, databases, tutorials and resources until we launched this wiki. For more choice and access to the 5000+ tools listed here, go to the homepage. Commercial tools with low license prices are marked "fairware"

Contents 1 Sequences 1.1 Restriction analysis 1.2 Translation tools 1.3 Sequence alignment 1.3.1 Phylogenetic Tree Prediction 2 Finding Genes and Promoters 2.1 Gene Identification - eukaryotes and Intron/exon finding 2.2 Gene Identification- prokaryotes 2.3 Transcription factors 3 PCR, Protocols and Tools 3.1 PCR tutorials 3.2 Protocols 4 Working with Proteins 4.1 Protein structure 4.1.1 Transmembrane domains 5 Databases 6 Genomics, Microarrays, Proteomics and Metabolomics (Omics) 7 Education, Jobs, and OpenCourseWare [edit] Sequences NCBI EBI DDBJ NCBI BLAST EBI FASTA Reverse complement ReadSeq (seq. conversion) DNA for Windows (fairware) SeqPup Vector Search VectorDB SeqVerter BCM Search Launcher [edit] Restriction analysis RestrictionMapper NEB Cutter Web Map Java Mapper WatCut EnzymeX (Mac) Silent (Emboss) [edit] Translation tools DNA to protein translation (Lundberg) DNA to protein translation (Vitoria-Gasteiz) TransSeq BackTranslation [edit] Sequence alignment ClustalW Emboss Pairwise DiAlign BoxShade Mafft (protein) Multiple Alignment Resource MultAlin Consensus [edit] Phylogenetic Tree Prediction PAUP PHYLIP TreeTop [edit] Finding Genes and Promoters BDGP: Neural Network Promoter Prediction Web Promoter Scan Service Promoter 2.0 Prediction Server Dragon Promoter Finder PromoSer: The mammalian promoter service Dragon GC+ Promoter Finder PlantCARE, plant promoter database Eukaryotic Promoter Database [edit] Gene Identification - eukaryotes and Intron/exon finding Dragon Gene Start Finder GenScan (MIT) SoftBerry GeneFinding GeneSplicer [edit] Gene Identification- prokaryotes GLIMMER ZCURVE Gismo MetaGene [edit] Transcription factors TFSEARCH MatInspector Match

[edit] PCR, Protocols and Tools Primer3 PrimerQuest Virtual PCR ExonPrimer WebPrimer NetPrimer Oligo calculator Oligo2002 Sequencing primers AutoPrime PrimerX Primer Generator(mutagenic) FastPCR PerlPrimer MethPrimer PrimerBank (expression) CODEHOP (degenerate) OligoMaster (fairware) Primer Design Assistant [edit] PCR tutorials Tavi's PCR protocols Optimizing PCR PCR tutorial (CSHL) "Wayward PCR primers" tutorial Real-time PCR [edit] Protocols Protocol Online Microarrays [edit] Working with Proteins Structural Classification of Proteins (SCOP) The Universal Protein Resource (UniProt) Signal Scan Signal Scan [edit] Protein structure TopPred2 PredictProtein Geno3D PIMA domain analysis [edit] Transmembrane domains DAS transmembrane domain prediction Pred-Tmr2 HMMTOP [edit] Databases Genetics databases, Genomics databases, Protein structure databases, Microarray databases, Proteomics databases, ... [edit] Genomics, Microarrays, Proteomics and Metabolomics (Omics) Microarrays, Gene Expression, Transcriptomics, Databases, Biochemical and metabolic pathways, Metabolomics, Genomics, Proteomics, Systems Biology, Ontology [edit] Education, Jobs, and OpenCourseWare Online Bioinformatics Lectures PhD Jobs PubMed tools