Protein structure
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[edit] Categories which link here
[edit] Related subcategories
[edit] Protein structure - Quick Links
| Structural Classification of Proteins | Protein Data Bank (PDB) | |
| Swiss-Model | HMMSTR/I-sites/Rosetta Prediction Server | |
| UCLA / DOE | ENZIM.HU | |
| CKAAPs DB | SCOP | |
| SCOP |
[edit] Protein structure - Web Resources
Structural Classification of Proteins
Created by manual inspection and automated methods aims to provide a detailed and comprehensive description of the structural and evolutionary relationships between all proteins.
Protein Data Bank (PDB)
Unique worldwide repository for the processing and distribution of 3-D biological macromolecular structure data..
Swiss-Model
Fully automated protein structure homology-modeling server.
HMMSTR/I-sites/Rosetta Prediction Server
Predicts the structure of proteins from the sequence : secondary, local, supersecondary, and tertiary.
UCLA / DOE
The DOE FOLD Server - easy to register for free.
ENZIM.HU
Servers for sequenceâstructure relationship analysis and prediction. Tools available include: HMMTOP, SCPPRED, SCIDE, DAS-TMfilter, CYSREDOX, DAS, and PSORT-B.
CKAAPs DB
Structurally-similar proteins with dissimilar sequences. The Conserved Key Amino Acid Positions DataBase ( CKAAPs DB) provides access to an analysis of structurally similar proteins with dissimilar sequences where key residues within a common fold are identified. The CKAAPs identified from this theoretical analysis are provided to experimentalists and theoreticians for potential use in protein engineering and modeling. It has been suggested that CKAAPs may be crucial features for protein folding, structural stability and function. Over 170 substructures, as defined by the Combinatorial Extension (CE) database, which are found in approximately 3000 representative polypeptide chains have been analyzed and are available in the CKAAPs DB. CKAAPs DB also provides CKAAPs of the representative set of proteins derived from the CE and FSSP databases.
SCOP
Structural classification of proteins - provides a detailed and comprehensive description of the structural and evolutionary relationships between all proteins whose structure is known. The Structural Classification of Proteins (SCOP) database is a comprehensive ordering of all proteins of known structure, according to their evolutionary and structural relationships. Protein domains in SCOP are hierarchically classified into families, superfamilies, folds and classes. The continual accumulation of sequence and structural data allows more rigorous analysis and provides important information for understanding the protein world and its evolutionary repertoire.
SCOP
Structural Classification of Proteins.
